bird and mammalian blue resulting more from coherent scattering of light rather than incoherent scattering.

1. phase independent vs dependent

The fundamental dichotomy between incoherent (phase independent) and coherent (phase dependent) light scattering provides the best criterion for a classification of biological structural color production mechanisms. Incoherent scattering includes Rayleigh, Tyndall, and Mie scattering. Coherent scattering encompasses interference, reinforcement, thin-film reflection, and diffraction.

http://icb.oxfordjournals.org/cgi/content/abstract/43/4/591


 2.

Nature's Blues
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By Michael Nkansah

Animals put their many colors to an eclectic variety of uses. While birds like the peacock lusciously display their colorful plumage during courtship, amphibians like the poison dart frog release brightly colored, poisonous secretions for defense against predators. The milk snake, mountain king snake, and Colorado desert sand snake of the western United States have colorful banding patterns, which closely resemble that of the much more poisonous Arizona coral snake, enabling them to ward off potential predators.

Most of the colors that animals display are produced from pigments. In humans, skin color variation is caused primarily by differences in size and distribution of the pigment melanin. Birds, on the other hand, use carotenoid pigments in their feathers to produce the bright red and yellow colors they are noted for.

Mammalian Blue

The lurid glow of a mandrill’s face tells yet another of nature’s colorful stories. For years, blue-colored mammals have attracted much scientific interest, study, and speculation. Vertebrates, in general, have not been evolutionarily endowed with the capacity for producing blue pigment internally. Most vertebrates cannot even see the color, which explains why the evolution of blue pigments in vertebrates has been generally retarded. This consequently suggests that primates like the West African mandrill and vervet monkey, as well as marsupials like the mouse opossum, must be producing their blues in some other way.

Sky Blue

In living systems, the most common source of coloration is pigmentation, in which portions of an incident light spectrum are absorbed while the remaining wavelengths are reflected as the color we perceive. The utter absence of blue pigments in mammals, however, has driven scientists over the past century to search for more structural explanations like the one given for the color of the sky.

The blue of the sky results from incoherent scattering of light particles rather than from pigmentation. In this mechanism, also known as Rayleigh/Tyndall scattering, the random, small-sized structures of nitrogen and oxygen present in the atmosphere preferentially scatter the small wavelengths of light — blue and violet — allowing longer ones to pass through. The resulting color we see is the scattering of blue and violet light. Until now, scientists have used this same explanation for mammalian blue.

Structural Coloration

Professor Richard Prum’s work has provided important cues to our understanding of how coloration evolved in mammals.
Professor Richard Prum’s work has provided important cues to our understanding of how coloration evolved in mammals. (Credit: Mike Marsland)

According to Richard Prum, professor of ecology and evolutionary biology and curator of vertebrate zoology at the Peabody Museum, scientists to date may very well have been wrong about the actual details of how the coloration occurs. Working in collaboration with a University of Kansas mathematics professor, Rodolfo Torres, Prum has shown that mammalian blue results more from coherent scattering of light rather than incoherent scattering.

Coherent scattering is what gives opal gems and oil slicks their iridescent color. Opal gems have crystal planes, and oil slicks have laminar layers, the parallel layers formed in non-turbulent streamline flow. These regularly arranged structures allow oil slicks and opal to scatter light at different angles, producing different hues of color. Whereas incoherent scattering models require the reflecting surfaces to be at randomized positions relative to the incident light, coherent scattering models require reflecting surfaces to have non-random, highly regular organization relative to incident light. Hence color produced from coherent scattering is described in terms of the phase interactions between light reflected from multiple surfaces. Incoherent scattering, however, considers each reflecting surface as spatially independent from the others and describes color as a function of the light reflected from individual surfaces.

Scientists had adopted the earlier explanation as an easy generalization from what was seen in the case of the sky, one where a non-iridescent color is produced by incoherent scattering. But they were wrong. The mistake was due in part to a sloppy characterization of all non-iridescent colors as incoherently produced, Prum explains. Mammalogists had assumed that melanocytes, biological colloids, or turbid protein media present in the dermis served as the randomized reflecting surfaces required by Tyndall scattering when, in reality, the dermal collagen fibers were responsible for producing the color.

Transmission electron micrographs of collagen arrays from structurally colored mammal skin. (A) Female mandrill facial skin. Scale bar, 500 nm. (B) Male mandrill rump skin. Scale bar, 1000 nm. (C) Male mandrill facial skin. Scale bar, 250 nm. (D) Male mandrill rump skin. Scale bar, 250 nm. (E) Vervet monkey scrotum. Scale bar, 500 nm. (F) Mouse opossum. Scale bar, 100 nm.
Transmission electron micrographs of collagen arrays from structurally colored mammal skin. (A) Female mandrill facial skin. Scale bar, 500 nm. (B) Male mandrill rump skin. Scale bar, 1000 nm. (C) Male mandrill facial skin. Scale bar, 250 nm. (D) Male mandrill rump skin. Scale bar, 250 nm. (E) Vervet monkey scrotum. Scale bar, 500 nm. (F) Mouse opossum. Scale bar, 100 nm. (Credit: Journal of Experimental Biology)

The erroneous assumptions of previous scientists could certainly be understood in light of the fact that cutting-edge technology needed for high-resolution nanostructural analysis became available only recently. So when Prum stumbled sometime last year across a museum-preserved Madagascan bird, the velvet asity, whose once green wartle had turned blue, he put his scientific hunch to the test. By studying the layers of collagen fiber present in the skin using electron microscopy, he observed hexagonally organized crystal-like arrays of parallel collagen fibers in the dermis — a level of organization that defied all conditions necessary for Rayleigh scattering. The surfaces observed were neither random nor spatially independent.

Discrete Fourier Transform

Working with Torres in Kansas, the two used a newly developed application of Discrete Fourier Transform (DFT). The Fourier tool decomposes an image into different periodic components, transforming discrete data into a combination of sine waves with different amplitudes and frequencies. The relative squared amplitudes of these component waves, called a Fourier power spectrum, then express the contribution of each variation’s frequency to the original data by indicating which frequency carries the most energy. The tool’s operation relies heavily on the use of a Fast Fourier Transform (FFT), which is a computer algorithm used in computing the DFT.

Following on the electromagnetic theory of corneal transparency by George Benedek of Massachusetts Institute of Technology, Prum and Torres used the 2D Fourier power spectrum of transmission electron micrographs of biological nanostructures in characterizing the spatial periodicity in refractive index variation within these structures. According to Benedek’s theory, any such periodicity would result in the reinforcement of a limited set of wavelengths. Hence the tool was used to test whether spatial variation in refractive index was random, as required for incoherent scattering, or periodic, as required for coherent scattering.

The bird’s blue wattle, it turned out, had a nanostructural organization that was not only comparable with those found in crystal lattices but also capable of scattering light particles coherently. Treatment with ethanol preservative had shrunk the dermal tissue, bringing fibers closer to one another and changing the wavelength they reflected. A subsequent study of a sister avian family, the sunbird asities, revealed less regular coherently scattering nanostructures, which Prum and Torres describes as “quasi-ordered.”

Prum’s observations provided the first phylogenetically documented instance of macroevolution between classes of coherently scattering nanostructures. For such periodic arrays, the 2D Fourier power spectrum could distinguish between laminar, crystal-like, and quasi-ordered nanostructures since laminar and crystal-like typically produce iridescence while quasi-ordered arrays do not.

Using the Fourier tool, Prum was able to correctly classify the structural color of several avian species like Philepitta castanea, which were previously believed to produce color by incoherent scattering. This began his year-long odyssey of identifying similar structures in mammals.

Studying the blue skin of mammals in similar fashion, Prum also observed quasi-order within the collagen fibers in the dermal medullary layer of the skin. In the June 15, 2004 issue of the Journal of Experimental Biology, Prum and Torres discussed the results of their ground-breaking research, suggesting that quasi-ordered nanostructure may have evolved convergently in the skins of mammals and birds. Prum’s seminal work in investigating biological nanostructures adds yet another entry to our long list of complex mechanisms nature employs in reaching its elusive ends.

About the Author

MICHAEL NKANSAH is a sophomore in Calhoun College majoring in chemical engineering.

Further Reading

The Prum Laboratory.
http://www.eeb.yale.edu/prum/research.htm

Angier, N. (2004, July 20). Some Blend In, Others Dazzle: The Mysteries of Animal Colors. New York Times.
http://www.nytimes.com/

Fellman, B. (2004) Blue’s Clues. Yale Alumni Magazine.
http://www.yalealumnimagazine.com/issues/2004_07/findings.html

Researchers solve riddle of what makes some mammals have skin that shines a brilliant blue. (2004) Yale Bulletin & Calendar. 32(30)
http://www.yale.edu/opa/v32.n30/

Acknowledgements

The author appreciates Professor Richard O. Prum’s help in preparing this article.

References

Prum, R. O. & Torres, R. (2003) Structural colouration of avian skin: convergent evolution of coherently scattering dermal collagen arrays. Journal of Experimental Biology. 206 (14), 2409-2429.

Prum, R. O. & Torres, R. H. (2004) Structural coloration of mammalian skin: convergent evolution of coherently scattering dermal collagen arrays. Journal of Experimental Biology. 207 (12), 2157-2172.

Prum, R. et al. (1999) Two-dimensional Fourier analysis of the spongy medullary keratin of structurally coloured feather barbs. Proceedings of the Royal Society of London. 266 (1414), 13-22.

http://ysm.research.yale.edu//article.jsp?articleID=290


3. structurally coloration in skin- coherent scattering, or constructive interference, from parallel collagen fibers

Richard O. Prum, Ph.D.

Bio | Publications | Research | People | Teaching | Software

Physics, Development, and Evolution of Structural Coloration

Unlike the colors produced by molecular pigments, the structural colors of organisms are produced by the physical interactions of light with nanometer scale biological structures. I became interested in structural colors through my studies of the evolution of intersexual display behavior and communication (See Phylogenetic Ethology and Sexual Selection link). In our first examination of structurally colored bird skin, we stumbled upon a previously undescribed mechanism of structurally coloration in skin- coherent scattering, or constructive interference, from parallel collagen fibers (Prum et al. 1994 link). In subsequent research, I teamed up with mathematician Dr. Rodolfo Torres of the University of Kansas Department of Mathematics to develop a new application of Fourier analysis to investigate structural color production by biological nanostructures.

Our first contribution to the physics of structural coloration has been the identification of a class of "quasi-ordered" or "amorphous" biological nanostructures– which are ordered only at the local scale– that produce non-iridescent structural colors by the mechanism of constructive interference, or coherent scattering. Coherent scattering is the selective reinforcement of a particular portion of the light spectrum because of nanoscale spatial periodicity in variation in refractive index. Many well known biological structural colors are produced by laminar or crystal-like arrays of materials of different refractive indices. Laminar or crystal-like arrays typically produce iridescence, or a prominent change in color with angle of observation and illumination. In contrast, quasi-ordered nanostructures are sufficiently ordered at the spatial scale of nearest neighbors, but they lack the higher level order of the laminar and crystal-like arrays. As a consequence, the average differences in path length additions among light waves back scattered by a quasi-ordered array are the same for many different angles. This nanostructure creates coherent scattering of a select range of wavelengths without creating the conditions for iridescence. Because of their lack of iridescence, many color producing quasi-ordered arrays have been erroneously hypothesized to produce color by incoherent scattering (or Rayleigh, Tyndall, or Mie scattering). By examining the spatial periodicity of variations in refractive index, we can test whether these biological nanostructures produced colors by coherent or incoherent scattering.

We have documented structural color producing by quasi-ordered arrays in the spongy medullary layer of bird feathers in dermal collagen arrays of bird skin, and in evolutionarily convergent arrays in mammal skin. Because we have falsified so many hypothesized examples of incoherent scattering in organisms, we are also testing alternative hypotheses of color production in blue dragonflies (Odonata), structurally colored butterflies (Lepidoptera), and the human iris.

Little research has been done on the evolution and development of color producing nanostructures. The origin of structural color production requires the evolution of periodic optical nanostructures from some plesiomorphic organization. We have also identified instances of the evolutionary transitions between quasi-ordered and crystal-like nanostructures. The Fourier Tool provides a new, alternative method for the comparative, optical analysis of diverse nanostructures, and can provide the first method for optical analysis of transitions among major classes of coherently scattering nanostructures.

Future work is focusing on the evolution of color producing nanostructures within avian clades, the development of self-assembled optical nanostructures, and mathematical simulations of the evolution of nanostructure in response to optical selection (i.e. sexual or social selection on structural color).

References

Prum, R. O., Morrison, R. L., and Ten Eyck, G. R. 1994. Structural color production by constructive reflection from ordered collagen arrays in a bird (Philepitta castanea: Eurylaimidae). Journal of Morphology 222: 61-72.

Prum, R. O., Torres, R. H., Williamson, S., and Dyck, J. 1998. Coherent light scattering by blue bird feather barbs. Nature 396: 28-29.

Prum, R. O., Torres, R. H., Williamson, S., and Dyck, J. 1999. Two-dimensional Fourier analysis of the spongy medullary keratin of structurally coloured feather barbs. Proceedings of the Royal Society, London: Biological Sciences (B) 266: 13-22.

Prum, R. O. 1999. The anatomy and physics of avian structural colours. In: Proceedings of the XXIInd International Ornithological Congress. Adams, N. J. and Slotow, R. H. (eds.). S29.1: 1633-1653. Johannesburg: BirdLife South Africa.

Prum, R. O., Andersson, and S. F., Torres, R. M. 2003. Coherent scattering of ultraviolet light by avian feather barbs. Auk 120:163-170.

Prum, R. O., and Torres, R. H. 2003. Structural colouration of avian skin: Convergent evolution of coherently scattering dermal collagen arrays. Journal of Experimental Biology. 206: 2409-2429.

Prum, R. O., and Torres, R. H. 2003. A Fourier tool for the analysis of coherent light scattering by bio-optical nanostructures. Integrative and Comparative Biology 43: 591-610.

Prum, R. O., and Torres, R. H. 2004. Structural colouration of mammalian skin: Convergent evolution of coherently scattering dermal collagen arrays. Journal of Experimental Biology. In press.

Prum, R. O., and Torres, R. H. 2004. Structural colouration of mammalian skin: Convergent evolution of coherently scattering dermal collagen arrays. Journal of Experimental Biology 207: 2157-2172.

Prum, R. O., Cole, J. A., and Torres, R. H. 2004. Blue integumentary structural colours in dragonflies (Odonata) are not produced by incoherent Tyndall scattering. Journal of Experimental Biology 207:3999-4009.

Prum, R. O., Quinn, T., and Torres, R. H. 2006. Anatomically diverse butterfly scales all produce structural colours by coherent scattering. Journal of Experimental Biology 209: 748-765.

Shawkey, M. D, , Saranathan, V., Pálsdóttir, H., Crum, J., Ellisman, M., Auer, M., Prum, R. O. 2009. Electron tomography, three-dimensional Fourier analysis and colour prediction of a three-dimensional amorphous biophotontic nanostructure. Journal of the Royal Society Interface doi:10.1098/rsif.2008.0374.focus

Prum, R. O., E. R. Dufresne, Quinn, T., and Waters, K. 2009. Development of colour producing b-keratin nanostructures in avian feather barbs. Journal of the Royal Society Interface In Press.

Prum, R. O., Dufresne, E. R., Quinn, T., and Waters, K. 2009. Development of colour producing ?-keratin nanostructures in avian feather barbs. Journal of the Royal Society Interface 6:S253-S265. doi:10.1098/rsif.2008.0466.focus

http://www.yale.edu/eeb/prum/physics.htm